PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G172500.2
Common NameB456_011G172500, LOC105777326
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 213aa    MW: 24138.3 Da    PI: 7.0481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G172500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-0961108454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++  rE+ RR+++N++f  L + l +    +  + +K++iL  A++ + +L
  Gorai.011G172500.2  61 TKACREKLRREKLNERFLDLSSTLEPG---RPARTDKSAILDDAIRVLTQL 108
                         6789**********************8...789*************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-1249122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.64E-655113No hitNo description
PROSITE profilePS5088812.84357108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-661108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-863114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1063130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDLIEVWDFL DFSFIDENTS PDILLPNYSG REIVVHQEKE FVDRDCSRKR GRSGSCSRPG  60
TKACREKLRR EKLNERFLDL SSTLEPGRPA RTDKSAILDD AIRVLTQLRT DAQELKETNE  120
KLLEEIKSLK AEKNEIREEK LVLKANKERI EQQLKTLNVS AAGYLPAHPA GYHAAANKMA  180
VFPGYGLVPV WQYLPPSARD TSQDHEHRPP AA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00102PBMTransfer from AT4G14410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455995.11e-157PREDICTED: transcription factor bHLH104-like isoform X2
SwissprotQ8L4679e-83BH104_ARATH; Transcription factor bHLH104
TrEMBLA0A0D2UUC41e-157A0A0D2UUC4_G
STRINGPOPTR_0010s08360.15e-90(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.13e-52bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]